Welcome to SNPster version_3.3

Tutorial!

Enter optional user note (to identify run):

Genotype file to use: ?

Paste phenotype data into box below (example one-way or two-way data) ?
View strain list

Log transform the data phenotype data ?

Choose test statistic: ?

F-testChi-squared

Choose method of calculating significance: ?
ParametricNonparametric / weighted

Compute gFWER? (not allowed with nonparametric option) ?


Nonparametric options:
Number of bootstraps for p-value: ?
-log10p threshold: ?
weight exponent ?

Subgenome scan parameters: ?
Chromosome: (0 indicates whole-genome scan, 20 indicates Chr X)
Start position: bases
End position: bases

Haplotype group filtering criteria: ?
There must be at least haplotypes with members each for a locus to be included.
Additional haplotypes must have members each to be included.

Other parameters:
Window size, in SNPs: ?

gFWER options:
Number of runs : ?
Number of tolerated false positives (k) : ?


Downloads
References
Questions/problems/bugs? Email: snpster@gnf.org